Module convert_data |
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# Module convert_data

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convert_data() Converts the data from upstream and downstream files to a format that can be used by learnrdr. | source code

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### convert_data() | source code
Converts the data from upstream and downstream files to a format that can be used by learnrdr. File retrieve-seq.2009_04_20.154301.res contains upstream sequences and retrieve-seq.2009_04_20.154355.res downstream sequences. A command line argument (N) specifies the size of data files to create. Files upstreamN.txt, dowsnstreamN.txt and random N.txt are created. For each, N/2 sequences are randomly chosen from retrieve-seq.2009_04_20.154301.res and N/2 from retrieve-seq.2009_04_20.154355.res with sequences from retrieve-seq.2009_04_20.154301.res labelled "1" in upstreamN.txt and "-1" in downstreamN.txt and vice versa for retrieve-seq.2009_04_20.154355.res. The sequences in randomN.txt are labelled "1" or "-1" randomly.