#GAPWM - Improves initial PWM with the help of genetic algorithm.
#(Estimation is two kinds: p-value or ROC AUC).
#
#author: Anton Stalnuhhin
#mail: a30858@math.ut.ee


FOLDERS:
src - source of the program.
lib - libraries to compile and run the program.
docs - documentation and javadoc.
dist - compiled version of the program + examples.


TO COMPILE THE PROGRAM:
1. Ant must be defined in classpath.
2. In the project root directory run 'ant jar'.
3. 'gapwm.jar' appears in ./build/jar/ directory.


TO RUN THE PROGRAM:
Reccomend to look throught examples in ./dist directory:

getROC_*.sh - are examples of getting coordinates for ROC.

test_*.sh, yeast1_*.sh, yeast2_*.sh, yeast3_*.sh - are
examples to run genetic algorithm with defined properties.