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## ee.ut.ga.business
Class FitnessFunction

    java.lang.Object
      ee.ut.ga.business.FitnessFunction

public class FitnessFunction
extends java.lang.Object

Field Summary
`static org.apache.log4j.Logger` | `log`

Constructor Summary
`FitnessFunction()`

Method Summary
`static java.util.List` | `calculateAllWeights(java.util.Map data, PWM pwm)` Calculates all weights for specified Position-Weight-Matrix in given data.
`static void` | `setFitnessValue(java.util.Map data, PWM pwm, int GOOD_ALL, java.lang.String FITNESS_FUNCTION)` Counts fitness value of specified `PWM` in given data.

Methods inherited from class java.lang.Object
`equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait`

Field Detail

### log

    public static org.apache.log4j.Logger log

Constructor Detail

### FitnessFunction

    public FitnessFunction()

Method Detail

### setFitnessValue

    public static void setFitnessValue(java.util.Map data,
                                       PWM pwm,
                                       int GOOD_ALL,
                                       java.lang.String FITNESS_FUNCTION)

  Counts fitness value of specified `PWM` in given data. Fitness value counts with the help of pValue. Larger result means that `PWM` suits better to the final result of the project.

### calculateAllWeights

    public static java.util.List calculateAllWeights(java.util.Map data,
                                                     PWM pwm)

  Calculates all weights for specified Position-Weight-Matrix in given data.

  Returns:
    `List` of `Weight`

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