ee.ut.ga.business
Class ReproductionMethods

java.lang.Object
  ee.ut.ga.business.ReproductionMethods

public class ReproductionMethods

extends java.lang.Object

Field Summary

static org.apache.log4j.Logger

log

Constructor Summary

ReproductionMethods()

Method Summary

private static PWM	addColumn(PWM parentPWM, int position, java.util.Map priors) Adds column into PWM at the specified position.
private static PWM	addColumn(PWM parentPWM, java.util.Map priors) Adds column into PWM at random position.
private static PWM	deleteColumn(PWM parentPWM, int position, java.util.Map priors) Deletes column in PWM at the specified position.
private static PWM	deleteColumn(PWM parentPWM, java.util.Map priors) Deletes random column in PWM.
static PWM	reproduct(java.util.List parents, java.util.Map priors, int PWM_MIN_LENGTH) Reproducts new PWM using random parent and random reproduction method.
private static PWM	reproduct(PWM parentPWM, int mutationTimes, java.util.Map priors, int PWM_MIN_LENGTH) Randomly chooses one of reproduction methods.
private static PWM	reproduct(PWM parentPWM, java.util.Map priors, int PWM_MIN_LENGTH) Randomly chooses one of reproduction methods.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

log

public static org.apache.log4j.Logger log

Constructor Detail

ReproductionMethods

public ReproductionMethods()

Method Detail

reproduct

public static PWM reproduct(java.util.List parents,
                            java.util.Map priors,
                            int PWM_MIN_LENGTH)
                     throws java.lang.Exception

Reproducts new PWM using random parent and random reproduction method.

Throws:

java.lang.Exception

reproduct

private static PWM reproduct(PWM parentPWM,
                             int mutationTimes,
                             java.util.Map priors,
                             int PWM_MIN_LENGTH)
                      throws java.lang.Exception

Randomly chooses one of reproduction methods.

Throws:

java.lang.Exception

reproduct

private static PWM reproduct(PWM parentPWM,
                             java.util.Map priors,
                             int PWM_MIN_LENGTH)
                      throws java.lang.Exception

Randomly chooses one of reproduction methods.

Throws:

java.lang.Exception

deleteColumn

private static PWM deleteColumn(PWM parentPWM,
                                int position,
                                java.util.Map priors)
                         throws java.lang.Exception

Deletes column in PWM at the specified position.

Throws:

java.lang.Exception

deleteColumn

private static PWM deleteColumn(PWM parentPWM,
                                java.util.Map priors)
                         throws java.lang.Exception

Deletes random column in PWM.

Throws:

java.lang.Exception

addColumn

private static PWM addColumn(PWM parentPWM,
                             int position,
                             java.util.Map priors)
                      throws java.lang.Exception

Adds column into PWM at the specified position.

Throws:

java.lang.Exception

addColumn

private static PWM addColumn(PWM parentPWM,
                             java.util.Map priors)
                      throws java.lang.Exception

Adds column into PWM at random position.

Throws:

java.lang.Exception