ee.ut.ga.model
Class PWM

java.lang.Object
  ee.ut.ga.model.PWM

All Implemented Interfaces:

java.lang.Comparable

public class PWM

extends java.lang.Object

implements java.lang.Comparable

Position-WeightMatrix object. Comparable by fitness function quality.

Field Summary

private int	dataBad
private int	dataBadAll
private int	dataGood
private int	dataGoodAll
private java.math.BigDecimal	fitness
private int	length
static org.apache.log4j.Logger	log
private java.util.Map	pam
private java.lang.String	pattern
private java.util.Map	pwm
private double	weightThreshold

Constructor Summary

PWM(java.util.Map pam, java.util.Map priors)

Method Summary

int	compareTo(java.lang.Object o)
private java.lang.String	constructPwmProps() Construct the string of properties to write it into log-file and the last solution.
int	getDataBad()
int	getDataBadAll()
int	getDataGood()
int	getDataGoodAll()
java.math.BigDecimal	getFitness()
int	getLength()
java.util.Map	getPam()
java.lang.String	getPattern()
java.util.Map	getPwm()
double	getWeightThreshold()
void	setDataBad(int dataBad)
void	setDataBadAll(int dataBadAll)
void	setDataGood(int dataGood)
void	setDataGoodAll(int dataGoodAll)
void	setFitness(java.math.BigDecimal fitness)
void	setPwmProps(java.lang.String propsString) Reads and writes properties into object.
void	setWeightThreshold(double weightThreshold)
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

log

public static org.apache.log4j.Logger log

pam

private java.util.Map pam

pwm

private java.util.Map pwm

pattern

private java.lang.String pattern

fitness

private java.math.BigDecimal fitness

length

private int length

dataGoodAll

private int dataGoodAll

dataGood

private int dataGood

dataBadAll

private int dataBadAll

dataBad

private int dataBad

weightThreshold

private double weightThreshold

Constructor Detail

PWM

public PWM(java.util.Map pam,
           java.util.Map priors)
    throws java.lang.Exception

Method Detail

getDataBad

public int getDataBad()

setDataBad

public void setDataBad(int dataBad)

getDataBadAll

public int getDataBadAll()

setDataBadAll

public void setDataBadAll(int dataBadAll)

getDataGood

public int getDataGood()

setDataGood

public void setDataGood(int dataGood)

getDataGoodAll

public int getDataGoodAll()

setDataGoodAll

public void setDataGoodAll(int dataGoodAll)

getWeightThreshold

public double getWeightThreshold()

setWeightThreshold

public void setWeightThreshold(double weightThreshold)

setFitness

public void setFitness(java.math.BigDecimal fitness)

getPattern

public java.lang.String getPattern()

getLength

public int getLength()

getPam

public java.util.Map getPam()

getPwm

public java.util.Map getPwm()

getFitness

public java.math.BigDecimal getFitness()

compareTo

public int compareTo(java.lang.Object o)

Specified by:

compareTo in interface java.lang.Comparable

toString

public java.lang.String toString()

constructPwmProps

private java.lang.String constructPwmProps()

Construct the string of properties to write it into log-file and the last solution.

setPwmProps

public void setPwmProps(java.lang.String propsString)

Reads and writes properties into object.