A B C D E F G H I L M N P R S T W X Y

S

StartGA - class ee.ut.ga.tools.StartGA.

Genetic Algorithm for the Discovery of DNA Regulatory Elements.

StartGA() - Constructor for class ee.ut.ga.tools.StartGA

select() - Method in class ee.ut.ga.business.GeneticAlgorithm

Second step of GA: selection - get the best PWMs.

setBestValue(PWM, int, int, int, int, double) - Static method in class ee.ut.ga.business.FitnessFunction

setDataBad(int) - Method in class ee.ut.ga.model.PWM

setDataBadAll(int) - Method in class ee.ut.ga.model.PWM

setDataGood(int) - Method in class ee.ut.ga.model.PWM

setDataGoodAll(int) - Method in class ee.ut.ga.model.PWM

setDataRow(int) - Method in class ee.ut.ga.model.Weight

setDataRowPosition(int) - Method in class ee.ut.ga.model.Weight

setFitness(BigDecimal) - Method in class ee.ut.ga.model.PWM

setFitnessValue(Map, PWM, int, String) - Static method in class ee.ut.ga.business.FitnessFunction

Counts fitness value of specified PWM in given data.

setPwmProps(String) - Method in class ee.ut.ga.model.PWM

Reads and writes properties into object.

setWeight(double) - Method in class ee.ut.ga.model.Weight

setWeightThreshold(double) - Method in class ee.ut.ga.model.PWM

setX(BigDecimal) - Method in class ee.ut.ga.model.Coordinate

setX(double) - Method in class ee.ut.ga.model.Coordinate

setY(BigDecimal) - Method in class ee.ut.ga.model.Coordinate

setY(double) - Method in class ee.ut.ga.model.Coordinate