A B C D E F G H I L M N P R S T W X Y

C

C - Static variable in class ee.ut.ga.util.PropertyUtil

ConstantsEnum - class ee.ut.ga.util.ConstantsEnum.

ConstantsEnum() - Constructor for class ee.ut.ga.util.ConstantsEnum

Coordinate - class ee.ut.ga.model.Coordinate.

Keeps coordinates: x and y.

Coordinate(double, double) - Constructor for class ee.ut.ga.model.Coordinate

Coordinate(BigDecimal, BigDecimal) - Constructor for class ee.ut.ga.model.Coordinate

calculate(List, double) - Static method in class ee.ut.ga.business.FitnessFunction

Calculates quantity of DNA sequencies where maximum weight is not less than threshold.

calculateAllWeights(Map, PWM) - Static method in class ee.ut.ga.business.FitnessFunction

Calculates all weights for specified Position-Weight-Matrix in given data.

calculateOptimalPValue(List, PWM) - Static method in class ee.ut.ga.business.FitnessFunction

Calculates optimal pValue.

calculateOptimalPValue(List, PWM, int) - Static method in class ee.ut.ga.business.FitnessFunction

Calculates optimal pValue.

column - Variable in class ee.ut.ga.model.MatrixKey

combination(BigDecimal, BigDecimal) - Static method in class ee.ut.ga.util.MathUtil

Computes combination without repetition: C^r[n].

compareTo(Object) - Method in class ee.ut.ga.model.PWM

compareTo(Object) - Method in class ee.ut.ga.model.Weight

constructPwmProps() - Method in class ee.ut.ga.model.PWM

Construct the string of properties to write it into log-file and the last solution.

createROC(String) - Static method in class ee.ut.ga.business.RocGraph