ee.ut.ga.business
Class FitnessFunction

java.lang.Object
  ee.ut.ga.business.FitnessFunction

public class FitnessFunction

extends java.lang.Object

Field Summary

static org.apache.log4j.Logger

log

Constructor Summary

FitnessFunction()

Method Summary

static java.util.List	calculateAllWeights(java.util.Map data, PWM pwm) Calculates all weights for specified Position-Weight-Matrix in given data.
static void	setFitnessValue(java.util.Map data, PWM pwm, int GOOD_ALL, java.lang.String FITNESS_FUNCTION) Counts fitness value of specified PWM in given data.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

log

public static org.apache.log4j.Logger log

Constructor Detail

FitnessFunction

public FitnessFunction()

Method Detail

setFitnessValue

public static void setFitnessValue(java.util.Map data,
                                   PWM pwm,
                                   int GOOD_ALL,
                                   java.lang.String FITNESS_FUNCTION)

Counts fitness value of specified PWM in given data. Fitness value counts with the help of pValue. Larger result means that PWM suits better to the final result of the project.

calculateAllWeights

public static java.util.List calculateAllWeights(java.util.Map data,
                                                 PWM pwm)

Calculates all weights for specified Position-Weight-Matrix in given data.

Returns:

List of Weight