ee.ut.ga.model
Class PWM

java.lang.Object
  ee.ut.ga.model.PWM

All Implemented Interfaces:

java.lang.Comparable

public class PWM

extends java.lang.Object

implements java.lang.Comparable

Position-WeightMatrix object. Comparable by fitness function quality.

Field Summary

static org.apache.log4j.Logger

log

Constructor Summary

PWM(java.util.Map pam, java.util.Map priors)

Method Summary

int	compareTo(java.lang.Object o)
int	getDataBad()
int	getDataBadAll()
int	getDataGood()
int	getDataGoodAll()
java.math.BigDecimal	getFitness()
int	getLength()
java.util.Map	getPam()
java.lang.String	getPattern()
java.util.Map	getPwm()
double	getWeightThreshold()
void	setDataBad(int dataBad)
void	setDataBadAll(int dataBadAll)
void	setDataGood(int dataGood)
void	setDataGoodAll(int dataGoodAll)
void	setFitness(java.math.BigDecimal fitness)
void	setPwmProps(java.lang.String propsString) Reads and writes properties into object.
void	setWeightThreshold(double weightThreshold)
java.lang.String	toString()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

log

public static org.apache.log4j.Logger log

Constructor Detail

PWM

public PWM(java.util.Map pam,
           java.util.Map priors)
    throws java.lang.Exception

Method Detail

getDataBad

public int getDataBad()

setDataBad

public void setDataBad(int dataBad)

getDataBadAll

public int getDataBadAll()

setDataBadAll

public void setDataBadAll(int dataBadAll)

getDataGood

public int getDataGood()

setDataGood

public void setDataGood(int dataGood)

getDataGoodAll

public int getDataGoodAll()

setDataGoodAll

public void setDataGoodAll(int dataGoodAll)

getWeightThreshold

public double getWeightThreshold()

setWeightThreshold

public void setWeightThreshold(double weightThreshold)

setFitness

public void setFitness(java.math.BigDecimal fitness)

getPattern

public java.lang.String getPattern()

getLength

public int getLength()

getPam

public java.util.Map getPam()

getPwm

public java.util.Map getPwm()

getFitness

public java.math.BigDecimal getFitness()

compareTo

public int compareTo(java.lang.Object o)

Specified by:

compareTo in interface java.lang.Comparable

toString

public java.lang.String toString()

setPwmProps

public void setPwmProps(java.lang.String propsString)

Reads and writes properties into object.