Tartu Ülikooli
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ADA, Tartu Ülikooli digitaalarhiivi sisuks on peamiselt Tartu Ülikooli monograafiad, doktoritööd, üliõpilastööd, lõputööd, magistritööd, õppematerjalid, Tartu Ülikooli raamatukogus digiteeritud materjalid ning Tartu Ülikooli teadlaste isikuarhiivid. Digitaalarhiivis olevaid materjale hoitakse turvaliselt ja varustatakse püsilingiga. Teenuse haldamise ja arendamisega tegeleb Tartu Ülikooli raamatukogu.

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Doktoritööd al. 2004. MSc, PhD (ETD)

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Humanitaarteadused ja kunstid

Loodus- ja täppisteadused

Meditsiiniteadused

Sotsiaalteadused

Eesti Muusika- ja Teatriakadeemia

Eesti Teadusagentuur ja teised asutused

Haridus- ja Teadusministeerium

Tartu Ülikooli kirjastus

Hiljutised sisestused

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Greening of a boreal rich fen driven by CO2 fertilisation
(2024) Thayamkottu, Sandeep; Smallman, T. Luke; Pärn, Jaan; Mander, Ülo; Euskirchen, Eugénie S; Kane, Evan S
Boreal peatlands store vast amounts of soil organic carbon (C) owing to the imbalance between productivity and decay rates. In the recent decades, this carbon stock has been exposed to a warming climate. During the past decade alone, the Arctic has warmed by ∼ 0.75°C which is almost twice the rate of the global average. Although, a wide range of studies have assessed peatlands’ C cycling, our understanding of the factors governing source / sink dynamics of peatland C stock under a warming climate remains a critical uncertainty at site, regional, and global scales. Here our focus was on answering two key questions: (1) What drives the interannual variability of carbon dioxide (CO2) fluxes at the Bonanza Creek rich fen in Alaska, and (2) What are the internal carbon allocation patterns during the study years? We addressed these knowledge-gaps using an intermediate complexity terrestrial ecosystem model calibrated by a Bayesian model-data fusion framework at a weekly timestep with publicly available eddy covariance, satellite-based earth observation, and in-situ datasets for 2014 to 2020. We found that the greening trend (a relative increase of leaf area index ∼0.12 m2 m-2 by 2020) in the fen ecosystem is forced by a CO2 fertilisation effect which in combination resulted in increased gross primary production (GPP). Relative to 2014, GPP increased by ∼75 gC m-2 year-1 (by 2020; 95% confidence interval (CI): -41.35 gC m-2 year-1 to 213.55 gC m-2 year-1) while heterotrophic respiration stayed constant. Consistent with the observed greening, our analysis indicates that the ecosystem allocated more C to foliage (∼50%) over the structural (A carbon pool consisting of branches, stems and coarse roots; ∼30%) and fine root C pools (∼20%).
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Dry and wet periods determine stem and soil greenhouse gas fluxes in a northern drained peatland forest
(2024) Ranniku, Reti; Mander, Ülo; Escuer-Gatius, Jordi; Schindler, Thomas; Kupper, Priit; Sellin, Arne; Soosaar, Kaido
Greenhouse gas (GHG) fluxes from peatland soils are relatively well studied, whereas tree stem fluxes have received far less attention. Simultaneous year-long measurements of soil and tree stem GHG fluxes in northern peatland forests are scarce, as previous studies have primarily focused on the growing season. We determined the seasonal dynamics of tree stem and soil CH4, N2O and CO2 fluxes in a hemiboreal drained peatland forest. Gas samples for flux calculations were manually collected from chambers at different heights on Downy Birch (Betula pubescens) and Norway Spruce (Picea abies) trees (November 2020–December 2021) and analysed using gas chromatography. Environmental parameters were measured simultaneously with fluxes and xylem sap flow was recorded during the growing season. Birch stems played a greater role in the annual GHG dynamics than spruce stems. Birch stems were net annual CH4, N2O and CO2 sources, while spruce stems constituted a CH4 and CO2 source but a N2O sink. Soil was a net CO2 and N2O source, but a sink of CH4. Temporal dynamics of stem CH4 and N2O fluxes were driven by isolated emissions' peaks that contributed significantly to net annual fluxes. Stem CO2 efflux followed a seasonal trend coinciding with tree growth phenology. Stem CH4 dynamics were significantly affected by the changes between wetter and drier periods, while N2O was more influenced by short-term changes in soil hydrologic conditions. We showed that CH4 emitted from tree stems during the wetter period can offset nearly half of the soil sink capacity. We presented for the first time the relationship between tree stem GHG fluxes and sap flow in a peatland forest. The net CH4 flux was likely an aggregate of soil-derived and stem-produced CH4. A dominating soil source was more evident for stem N2O fluxes.
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Nitrous oxide as second most important greenhouse gas in tropical peatlands
(2024) Pärn, Jaan; Espenberg, Mikk; Soosaar, Kaido; Kasak, Kuno; Thayamkottu, Sandeep; Schindler, Thomas; Ranniku, Reti; Sohar, Kristina; Malaverri, Lizardo Fachín; Melling, Lulie; Mander, Ülo
Earth’s climate largely depends on carbon and nitrogen exchange between the atmosphere and tropical peatland ecosystems. Permanently wet peatlands take up carbon dioxide in plants and accumulate organic carbon in soil but release methane. Man-made drainage releases carbon dioxide from peat soils. Carbon and nitrous gas exchange and their relationships with tropical peatland conditions are poorly understood. We analysed natural peat swamp forests and fens, moderately drained and dry peatlands under a wide variety of land uses. The tropical peat swamp forests were large greenhouse gas sinks while tropical peatlands under moderate and low soil moisture levels emitted carbon dioxide and nitrous oxide. Carbon dioxide uptake of 160 mg m–2 h–1 dominated the net greenhouse gas budgets overall, while nitrous oxide emission of 90 mg CO2-equivalent m–2 h–1 on average was the second most important contributor (ahead of average methane emissions of 36 mg CO2-equivalent m–2 h–1) across the whole tropical peat moisture range.
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15N tracers and microbial analyses reveal in situ N2O sources in contrasting water regimes of a drained peatland forest
(2024) Masta, Mohit; Espenberg, Mikk; Kuusemets, Laura; Pärn, Jaan; Thayamkottu, Sandeep; Sepp, Holar; Kirsimäe, Kalle; Sgouridis, Fotis; Kasak, Kuno; Soosaar, Kaido; Mander, Ülo
Managed peatlands are a significant source of nitrous oxide (N2O), a powerful greenhouse gas and stratospheric ozone depleter. Due to the complexity and diversity of microbial N2O processes, different methods such as tracer, isotopomer, and microbiological technologies are required to understand these processes. The combined application of different methods helps to precisely estimate these processes, which is crucial for the future management of drained peatlands, and to mitigate soil degradation and negative atmospheric impact. In this study, we investigated N2O sources by combining tracer, isotopomer, and microbial analysis in a drained peatland forest under flooded and drained treatments. On average, the nitrification genes showed higher abundances in the drained treatment, and the denitrification genes showed higher abundances in the flooded treatment. This is consistent with the underlying chemistry, as nitrification requires oxygen while denitrification is anaerobic. We observed significant differences in labelled N2O fluxes between the drained and flooded treatments. The emissions of N2O from the flooded treatment were nearly negligible, whereas the N2O evolved from the nitrogen-15 (15N)-labelled ammonium (15NH4+) in the drained treatment peaked at 147 μg 15N m-2 h-1. This initially suggested nitrification as the driving mechanism behind N2O fluxes in drained peatlands, but based on the genetic data, isotopic analysis, and N2O mass enrichment, we conclude that hybrid N2O formation involving ammonia oxidation was the main source of N2O emissions in the drained treatment. Based on the 15N-labelled nitrate (15NO3-) tracer addition and gene copy numbers, the low N2O emissions in the flooded treatment came possibly from complete denitrification producing inert dinitrogen. At atomic level, we observed selective enrichment of mass 45 of N2O molecule under 15NH4+ amendment in the drained treatment and enrichment of both masses 45 and 46 under 15NO3- amendment in the flooded treatment. The selective enrichment of mass 45 in the drained treatment indicated the presence of hybrid N2O formation, which was also supported by the high abundances of archaeal genes.
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Peatland restoration pathways to mitigate greenhouse gas emissions and retain peat carbon
(2024) Mander, Ülo; Espenberg, Mikk; Melling, Lulie; Kull, Ain
Peatlands play a crucial role in the global carbon (C) cycle, making their restoration a key strategy for mitigating greenhouse gas (GHG) emissions and retaining C. This study analyses the most common restoration pathways employed in boreal and temperate peatlands, potentially applicable in tropical peat swamp forests. Our analysis focuses on the GHG emissions and C retention potential of the restoration measures. To assess the C stock change in restored (rewetted) peatlands and afforested peatlands with continuous drainage, we adopt a conceptual approach that considers short-term C capture (GHG exchange between the atmosphere and the peatland ecosystem) and long-term C sequestration in peat. The primary criterion of our conceptual model is the capacity of restoration measures to capture C and reduce GHG emissions. Our findings indicate that carbon dioxide (CO2) is the most influential part of long-term climate impact of restored peatlands, whereas moderate methane (CH4) emissions and low N2O fluxes are relatively unimportant. However, lateral losses of dissolved and particulate C in water can account up to a half of the total C stock change. Among the restored peatland types, Sphagnum paludiculture showed the highest CO2 capture, followed by shallow lakes and reed/grass paludiculture. Shallow lakeshore vegetation in restored peatlands can reduce CO2 emissions and sequester C but still emit CH4, particularly during the first 20 years after restoration. Our conceptual modelling approach reveals that over a 300-year period, under stable climate conditions, drained bog forests can lose up to 50% of initial C content. In managed (regularly harvested) and continuously drained peatland forests, C accumulation in biomass and litter input does not compensate C losses from peat. In contrast, rewetted unmanaged peatland forests are turning into a persistent C sink. The modelling results emphasized the importance of long-term C balance analysis which considers soil C accumulation, moving beyond the short-term C cycling between vegetation and the atmosphere.
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Reviews and syntheses: Greenhouse gas emissions from drained organic forest soils – synthesizing data for site-specific emission factors for boreal and cool temperate regions
(2023) Jauhiainen, Jyrki; Heikkinen, Juha; Clarke, Nicholas; He, Hongxing; Dalsgaard, Lise; Minkkinen, Kari; Ojanen, Paavo; Vesterdal, Lars; Alm, Jukka; Butlers, Aldis; Callesen, Ingeborg; Jordan, Sabine; Lohila, Annalea; Mander, Ülo; Óskarsson, Hlynur; Sigurdsson, Bjarni D.; Søgaard, Gunnhild; Soosaar, Kaido; Kasimir, Åsa; Bjarnadottir, Brynhildur; Lazdins, Andis; Laiho, Raija
We compiled published peer-reviewed CO2, CH4, and N2O data on managed drained organic forest soils in boreal and temperate zones to revisit the current Tier 1 default emission factors (EFs) provided in the IPCC (2014) Wetlands Supplement: to see whether their uncertainty may be reduced; to evaluate possibilities for breaking the broad categories used for the IPCC EFs into more site-type-specific ones; and to inspect the potential relevance of a number of environmental variables for predicting the annual soil greenhouse gas (GHG) balances, on which the EFs are based. Despite a considerable number of publications applicable for compiling EFs being added, only modest changes were found compared to the Tier 1 default EFs. However, the more specific site type categories generated in this study showed narrower confidence intervals compared to the default categories. Overall, the highest CO2 EFs were found for temperate afforested agricultural lands and boreal forestry-drained sites with very low tree stand productivity. The highest CH4 EFs in turn prevailed in boreal nutrient-poor forests with very low tree stand productivity and temperate forests irrespective of nutrient status, while the EFs for afforested sites were low or showed a sink function. The highest N2O EFs were found for afforested agricultural lands and forestry-drained nutrient-rich sites. The occasional wide confidence intervals could be mainly explained by single or a few highly deviating estimates rather than the broadness of the categories applied. Our EFs for the novel categories were further supported by the statistical models connecting the annual soil GHG balances to site-specific soil nutrient status indicators, tree stand characteristics, and temperature-associated weather and climate variables. The results of this synthesis have important implications for EF revisions and national emission reporting, e.g. by the use of different categories for afforested sites and forestry-drained sites, and more specific site productivity categories based on timber production potential.
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Effects of Water Table Fluctuation on Greenhouse Gas Emissions from Wetland Soils in the Peruvian Amazon
(2023) Pärn, Jaan; Soosaar, Kaido; Schindler, Thomas; Machacova, Katerina; Muñoz, Waldemar Alegría; Fachín, Lizardo; Aspajo, José Luis Jibaja; Negron-Juarez, Robinson I.; Maddison, Martin; Rengifo, Jhon; Dinis, Danika Journeth Garay; Oversluijs, Adriana Gabriela Arista; Fucos, Manuel Calixto Ávila; Vásquez, Rafael Chávez; Wampuch, Ronald Huaje; García, Edgar Peas; Sohar, Kristina; Horna, Segundo Cordova; Gómez, Tedi Pacheco; Muñoz, Jose David Urquiza; Espinoza, Rodil Tello; Mander, Ülo
Amazonian swamp forests remove large amounts of carbon dioxide (CO2) but produce methane (CH4). Both are important greenhouse gases (GHG). Drought and cultivation cut the CH4 emissions but may release CO2. Varying oxygen content in nitrogen-rich soil produces nitrous oxide (N2O), which is the third most important GHG. Despite the potentially tremendous changes, GHG emissions from wetland soils under different land uses and environmental conditions have rarely been compared in the Amazon. We measured environmental characteristics, and CO2, CH4 and N2O emissions from the soil surface with manual opaque chambers in three sites near Iquitos, Peru from September 2019 to March 2020: a pristine peat swamp forest, a young forest and a slash-and-burn manioc field. The manioc field showed moderate soil respiration and N2O emission. The peat swamp forests under slight water table drawdown emitted large amounts of CO2 and CH4. A heavy post-drought shower created a hot moment of N2O in the pristine swamp forest, likely produced by nitrifiers. All in all, even small changes in soil moisture can create hot moments of GHG emissions from Amazonian wetland soils, and should therefore be carefully monitored.
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Towards an integrated view on microbial CH4, N2O and N2 cycles in brackish coastal marsh soils: A comparative analysis of two sites
(2024) Espenberg, Mikk; Pille, Kristin; Yang, Bin; Maddison, Martin; Abdalla, Mohamed; Smith, Pete; Li, Xiuzhen; Chan, Ping-Lung; Mander, Ülo
Coastal ecosystems, facing threats from global change and human activities like excessive nutrients, undergo alterations impacting their function and appearance. This study explores the intertwined microbial cycles of carbon (C) and nitrogen (N), encompassing methane (CH4), nitrous oxide (N2O), and nitrogen gas (N2) fluxes, to determine nutrient transformation processes between the soil-plant-atmosphere continuum in the coastal ecosystems with brackish water. Water salinity negatively impacted denitrification, bacterial nitrification, N fixation, and n-DAMO processes, but did not significantly affect archaeal nitrification, COMAMMOX, DNRA, and ANAMMOX processes in the N cycle. Plant species age and biomass influenced CH4 and N2O emissions. The highest CH4 emissions were from old Spartina and mixed Spartina and Scirpus sites, while Phragmites sites emitted the most N2O. Nitrification and incomplete denitrification mainly governed N2O emissions depending on the environmental conditions and plants. The higher genetic potential of ANAMMOX reduced excessive N by converting it to N2 in the sites with higher average temperatures. The presence of plants led to a decrease in the N fixers' abundance. Plant biomass negatively affected methanogenetic mcrA genes. Microbes involved in n-DAMO processes helped mitigate CH4 emissions. Over 93 % of the total climate forcing came from CH4 emissions, except for the Chinese bare site where the climate forcing was negative, and for Phragmites sites, where almost 60 % of the climate forcing came from N2O emissions. Our findings indicate that nutrient cycles, CH4, and N2O fluxes in soils are context-dependent and influenced by environmental factors and vegetation. This underscores the need for empirical analysis of both C and N cycles at various levels (soil-plant-atmosphere) to understand how habitats or plants affect nutrient cycles and greenhouse gas emissions.
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Unraveling microbial processes involved in carbon and nitrogen cycling and greenhouse gas emissions in rewetted peatlands by molecular biology
(2024) Gios, Emilie; Verbruggen, Erik; Audet, Joachim; Burns, Rachel; Butterbach-Bahl, Klaus; Espenberg, Mikk; Fritz, Christian; Glatzel, Stephan; Jurasinski, Gerald; Larmola, Tuula; Mander, Ülo; Nielsen, Claudia; Rodriguez, Andres F.; Scheer, Clemens; Zak, Dominik; Silvennoinen, Hanna M.
Restoration of drained peatlands through rewetting has recently emerged as a prevailing strategy to mitigate excessive greenhouse gas emissions and re-establish the vital carbon sequestration capacity of peatlands. Rewetting can help to restore vegetation communities and biodiversity, while still allowing for extensive agricultural management such as paludiculture. Belowground processes governing carbon fluxes and greenhouse gas dynamics are mediated by a complex network of microbial communities and processes. Our understanding of this complexity and its multi-factorial controls in rewetted peatlands is limited. Here, we summarize the research regarding the role of soil microbial communities and functions in driving carbon and nutrient cycling in rewetted peatlands including the use of molecular biology techniques in understanding biogeochemical processes linked to greenhouse gas fluxes. We emphasize that rapidly advancing molecular biology approaches, such as high-throughput sequencing, are powerful tools helping to elucidate the dynamics of key biogeochemical processes when combined with isotope tracing and greenhouse gas measuring techniques. Insights gained from the gathered studies can help inform efficient monitoring practices for rewetted peatlands and the development of climate-smart restoration and management strategies.
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Sotsiaalhoolekanne kohalikus omavalitsuses
(Tartu Ülikool, 2001) Härma, Kristiina; Liblik, Eve, juhendaja

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